Archana Bhardwaj

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2018 - GBIO0009 - Topics in Bioinformatics

In this course genetic concepts are introduced that are necessary to understand a selection of bioinformatics related data analysis problems. To solve these problems a variety of analytic tools will be explained and exemplified.

The course is in part based on interactive ex-cathedra lectures and in part on interactive practical sessions. The exercise sessions allow students to become familiar with the theoretical concepts introduced during the theory classes. They prepare students to successfully carry out their homework assignments.

This course was organized by Kristel VAN STEEN 

The practical sessions were given by Archana BHARDWAJ


Schedule

Start date 19 September 2018
Location  1.123,B28
Time 14:00-18:00


 

 

 Important

  "Classe will held at BIO3 - GIGA-R Medical Genomics Unit, Université de Liège"

Dates Topics Materials
Sep-19             Introduction                           

Course Organization

Course Administration

 Lecture 1                            

Sep-26  Introduction to R and PLINK

 

      Lecture2

     Sample Files          

      Marees2017

    Anderson2010

 

 

 Oct-3

Genetic mapping using GWAS: Why, What, How?

 

    Bush2012

 

 

 Oct-10
 GWAS in PLINK and Post-GWAS with DEPICT
 
 
 
 


 
 
 
 

 Oct-17

 

 Bioinformatics in Personalised Medicine : Focus on Molecular subtyping
 
 Lecture5
 





 Oct-24

 Molecular subtyping in practice



 

 

Oct-31

 

 
 Nov-7  Project  Discussion and Hands on help

 

 

 Nov-14

Practical use of Biofilter in GWAIs 

 
  Lecture7-Biofilter
 Nov-21

Project  Discussion and Hands on help

 
 Nov-28

System Medicine : Looking at interactions (Session I)

  
  •     HW2 : Updated

 Dec-5

 System Medicine : Looking at interactions (Session II)
 

Dec-12

HW2 presentations and discussion  

Dec-19

Feedback on homework;  

 

 


Marks

Tasks Points
Homework 1  
Homework 2  
Examination  
Presentation Participation  

 

 

 


 

    PLEASE SUBMIT YOUR HOMEWORK at email address a.bhardwaj@uliege.be

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