Archana Bhardwaj

Dates

Themes

GoToMeeting ID

Course materials

 March 4 (2-6pm)

 I: GWAS

 Face to face

• Bioinf applications_2020_course notes_CLASS Theme I

 April 1  (2-6pm)

 II: Systems Medicine

 185-433-821

• Bioinf applications_2020_course notes_CLASS Theme II
• Bioinf applications_2020_course notes_CLASS Theme I_II

 Assignment:

• Go to https://www.disgenet.org/ and the SEARCH button
• Go to “General links” and “Summary of All Variant-Disease Associations”
• Click on ADD/REMOVE FILTER
• Type in the DISEASE of your choice (make sure you use the convention suggested by the data bases)
• Select in addition SOURCE GWASCAT if you wish to have GWAS studies from the GWAS catalogue; alternatively select SOURCE GWASDB
• Take most recent studies “Last Ref” and/or those with a good number of evidences via “N PMIDs”
• GO!

• Bioinformatics Applications _Assignments and Organization 20192020-I
• Bioinformatics Applications _Assignments and Organization 20192020_II
• Critical reading

Examples:

• Literature on GWAS:
• Literature style papers _ gwas
• Literature style papers_GWAS_ practical examples
• Literature on Systems approaches:
• Literature style papers _systems
• Literature style papers_systems_6 practical examples

To prepare

Evaluated*

 April 22  (2-6pm)

I: presentations with  discussions

 ID: 175-601-917

 1. Slides (max 50) addressing

 2. Selection of slides addressing 3 Q in depth to present in 15 min

 Oral slides presentation   with  Q&A

 April 27  (2-6pm)

II: presentations with discussions

ID: 290-828-045

1. Slides (max 50) addressing

 2. Selection of slides addressing 3 Q in depth to present in 15 min

 Oral slides presentation with  Q&A

 Compilation of 1. before

 Written exam: Compilation  of slides into a  comprehensible “story” (details to be discussed: slides or doc)

Dates

Themes

To prepare

Evaluated*

Proposed scoring

 April 22  

  (2-6pm)                

I: presentations with educative discussions

1. Slides (max 50)  addressing the Qs

2. Selection of slides addressing 3 Q in depth to present in max 15 min

Oral slides presentation

with Q&A

30

  April 27 

  (2-6pm)

II: presentations with educative discussions

 1. Slides (max 50) addressing the Qs

 2. Selection of slides addressing 3 Q in depth to present in max 20min + results of group work: overlap between two topics

Oral slides presentation

with Q&A

20

10

Compilation of 1. before

Written exam: Compilation of slides into a comprehensible “story” (max 50 slides)

40 (based on accurateness and critical evaluation with links to literature and classes)